Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84785278_84785828_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

84785278 - 84785828

Intron Length:

551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TATTTGTTATCT

Flanking Amino Acid:

FFHWDLLQKSRGHCSVNSIV

Intron Amino Acid Position:

3292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

72.9

31.4

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

83.1

0.74

0.7

81.9

28.4

Minor 5ss

33.6

-1.9

41.1

45.4

Minor BPS

55.6

0.25

2.3

80.51

41.4

Associated Gene:

Gene:

ABCA13

Ensembl Gene ID:

ENSAPLG00000022104

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041212

84634060 - 84826838

192779