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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84786022_84787668_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84786022 - 84787668
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTATCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
NISLGIPRGECFGLLGTNGA
Intron Amino Acid Position:
3357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
86
26.8
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779