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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84787779_84797581_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84787779 - 84797581
Intron Length:
9803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCTTTTAAGC
Flanking Amino Acid:
AGRAVIRTPAGSELDILSAN
Intron Amino Acid Position:
3393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.3
34.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.6
0.67
0.9
78.1
34
Minor 5ss
36.3
-1.6
2.9
42.5
44.5
Minor BPS
64.9
0.45
1.6
74.92
35.8

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779