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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84797733_84806249_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84797733 - 84806249
Intron Length:
8517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTTCTAAACT
Flanking Amino Acid:
RGIPKQHICKVAEDLVNRLH
Intron Amino Acid Position:
3444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.5
0.55
0.9
67.5
37.7
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
69.4
0.69
1.6
83.19
37.7

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779