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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8480399_8493503_R

Intron Information:

Intron Rank:
151139
Intron Class:
major
Intron Phase:
Intron Coordinates:
8480399 - 8493503
Intron Length:
13105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCCTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.4
0.8
0.8
82.6
27.7
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
62
0.37
1.9
79.88
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025665
8479289 - 8493684
14396