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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84806385_84808873_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84806385 - 84808873
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTATCATTATTT
Flanking Amino Acid:
LVGKPQILLLDEPSSGMDPC
Intron Amino Acid Position:
3489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.7
74
30.5
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
56.6
0.28
1.9
75.14
41.3

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779