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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84808978_84811640_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84808978 - 84811640
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACCC
5'SS Class:
major
3'SS Sequence:
CCATGTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTCCACCA
Flanking Amino Acid:
DGCAAVLTSHSMEECEALCT
Intron Amino Acid Position:
3523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
61.2
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.1
0.54
0.9
68.8
36.9
Minor 5ss
33.9
-1.8
3
42.8
44.3
Minor BPS
49.2
-0
2.1
72.2
40

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779