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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84811734_84823792_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84811734 - 84823792
Intron Length:
12059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
ATATCATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTTCTGCATA
Flanking Amino Acid:
CLGSPQHIKNRFGDGYSVKI
Intron Amino Acid Position:
3554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.3
33
Major BPS
79.4
0.73
1
80.1
32
Major PPT
73.8
0.54
0.9
70.5
39.3
Minor 5ss
45.8
-0.4
2.9
64.9
46.4
Minor BPS
51.8
0.05
1.9
68.42
38.2

Associated Gene:

Gene:
ABCA13
Ensembl Gene ID:
ENSAPLG00000022104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041212
84634060 - 84826838
192779