About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84938840_84940534_F

Intron Information:

Intron Rank:
142644
Intron Class:
major
Intron Phase:
Intron Coordinates:
84938840 - 84940534
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
77.8
35.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
64.1
0.44
1.5
75.89
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023591
84937731 - 84940894
3164