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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84957330_84957731_F

Intron Information:

Intron Rank:
141624
Intron Class:
major
Intron Phase:
Intron Coordinates:
84957330 - 84957731
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
GCTTTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.8
37.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.1
0.63
0.9
70.3
40
Minor 5ss
41.9
-0.9
3.1
59.5
45
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026277
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029365
84957175 - 84963242
6068