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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84982009_84989023_F

Intron Information:

Intron Rank:
142398
Intron Class:
major
Intron Phase:
Intron Coordinates:
84982009 - 84989023
Intron Length:
7015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GCTTACTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.4
32.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.6
0.71
0.8
80
32
Minor 5ss
44.1
-0.6
2.9
58.3
46.6
Minor BPS
47.9
-0.1
2
60.6
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036546
84981957 - 84990130
8174