Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8513995_8516336_R

Intron Information:

Intron Rank:

141411

Intron Class:

major

Intron Phase:

Intron Coordinates:

8513995 - 8516336

Intron Length:

2342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTTTAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ACCTATTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

80.2

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.6

0.71

87.1

30.6

Minor 5ss

38.1

-1.3

3.1

48.5

47.7

Minor BPS

65.2

0.55

1.5

74.83

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034104

8513263 - 8519423

6161

ENSAPLT00000022974

8513263 - 8519423

6161