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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8516493_8519202_R

Intron Information:

Intron Rank:
141412
Intron Class:
major
Intron Phase:
Intron Coordinates:
8516493 - 8519202
Intron Length:
2710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCTC
5'SS Class:
major
3'SS Sequence:
TTAATTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATAATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
62.8
41.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
1
73.2
41.7
Minor 5ss
40.8
-1
3.4
58.6
46.2
Minor BPS
64.9
0.55
1.5
79
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022974
8513263 - 8519423
6161