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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8520466_8527042_R

Intron Information:

Intron Rank:
153901
Intron Class:
major
Intron Phase:
Intron Coordinates:
8520466 - 8527042
Intron Length:
6577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTATCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
71.8
34.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.7
85.5
29.1
Minor 5ss
39.5
-1.2
3.5
55
43.9
Minor BPS
55.7
0.26
1.8
73.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030291
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042559
8520422 - 8527762
7341