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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85214704_85237574_F

Intron Information:

Intron Rank:
137888
Intron Class:
major
Intron Phase:
Intron Coordinates:
85214704 - 85237574
Intron Length:
22871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.53
1
72.6
42.4
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
68.4
0.66
1.6
82.34
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044786
85214177 - 85238884
24708