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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85215356_85236133_F

Intron Information:

Intron Rank:
137882
Intron Class:
major
Intron Phase:
Intron Coordinates:
85215356 - 85236133
Intron Length:
20778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TATATCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
68.6
0.42
0.9
68.2
37.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59
0.36
1.8
77.33
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042026
85214994 - 85241645
26652