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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85236215_85237574_F

Intron Information:

Intron Rank:
137877
Intron Class:
major
Intron Phase:
Intron Coordinates:
85236215 - 85237574
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.53
1
72.6
42.4
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
68.4
0.66
1.6
82.34
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029384
85214177 - 85241645
27469
ENSAPLT00000042026
85214994 - 85241645
26652