About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85237711_85238696_F

Intron Information:

Intron Rank:
137878
Intron Class:
major
Intron Phase:
Intron Coordinates:
85237711 - 85238696
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.3
0.68
0.9
72.8
42.2
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
48.6
-0
2.4
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029384
85214177 - 85241645
27469
ENSAPLT00000044786
85214177 - 85238884
24708
ENSAPLT00000042026
85214994 - 85241645
26652