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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85238881_85238995_F

Intron Information:

Intron Rank:
137879
Intron Class:
major
Intron Phase:
Intron Coordinates:
85238881 - 85238995
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCATAC
U12 Branch Point Sequence:
GAGTCCATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
51.7
0.04
1.1
48.9
36.2
Major PPT
79.3
0.66
0.8
73.2
31.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
52.7
0.16
1.9
71.15
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029384
85214177 - 85241645
27469
ENSAPLT00000042026
85214994 - 85241645
26652