About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85240473_85240947_F

Intron Information:

Intron Rank:
137881
Intron Class:
major
Intron Phase:
Intron Coordinates:
85240473 - 85240947
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GAATTCTCACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71
37.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.7
0.65
0.7
73.8
24.5
Minor 5ss
37.7
-1.4
3
45.9
49.3
Minor BPS
43.1
-0.5
2
50.04
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042026
85214994 - 85241645
26652
ENSAPLT00000029384
85214177 - 85241645
27469