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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85330679_85331142_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85330679 - 85331142
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATGTAATT
Flanking Amino Acid:
LRHPGCPECCDLRCGDLGEN
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.5
0.62
0.9
68.7
42
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
58.9
0.36
2.1
84.41
36.8

Associated Gene:

Gene:
ZPBP
Ensembl Gene ID:
ENSAPLG00000002807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026945
85330355 - 85349956
19602