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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85337149_85339340_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85337149 - 85339340
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCA
Flanking Amino Acid:
KKLLLKYVIYAYSDPQYYYE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
69.5
0.61
1.8
83.94
36.4

Associated Gene:

Gene:
ZPBP
Ensembl Gene ID:
ENSAPLG00000002807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002834
85325335 - 85349956
24622
ENSAPLT00000026945
85330355 - 85349956
19602