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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85339491_85344294_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85339491 - 85344294
Intron Length:
4804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATTACT
Flanking Amino Acid:
WNGPGGYLSSENSSVQISPT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.8
0.42
1
62.6
43.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
53.7
0.2
1.9
77.35
39.2

Associated Gene:

Gene:
ZPBP
Ensembl Gene ID:
ENSAPLG00000002807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026945
85330355 - 85349956
19602
ENSAPLT00000002834
85325335 - 85349956
24622