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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85348804_85349839_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85348804 - 85349839
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTGTTTTATCT
Flanking Amino Acid:
LIISCYCSSQVQPSQGFLRS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.9
0.88
0.7
83.7
30.9
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
58.1
0.33
1.7
75.62
41.6

Associated Gene:

Gene:
ZPBP
Ensembl Gene ID:
ENSAPLG00000002807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026945
85330355 - 85349956
19602
ENSAPLT00000002834
85325335 - 85349956
24622