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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85356344_85361560_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85356344 - 85361560
Intron Length:
5217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
ATTAACACAATA
Flanking Amino Acid:
PAASVRARLGGWTTPVKVAP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
85.7
0.8
0.7
83.6
24.7
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
45.8
-0.3
1.9
61.45
38

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341