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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85361644_85363311_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85361644 - 85363311
Intron Length:
1668

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
SAFCMDPNLKELNDPSVSWR
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.4
1.17
0.7
94.3
13.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
75.3
0.57
0.8
74
36.5
Minor 5ss
26.7
-2.7
3.6
37.4
40
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341