Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85364155_85364641_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85364155 - 85364641

Intron Length:

487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCAGTGAA

5'SS Class:

major

3'SS Sequence:

TTTTTGATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTATTTTTGATT

Flanking Amino Acid:

RYNPEPEISQVIGNLWDRFQ

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.3

71.3

34.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

83.7

0.76

0.8

82.4

Minor 5ss

29.1

-2.4

32.2

Minor BPS

64.3

0.53

1.2

74.24

37.4

Associated Gene:

Gene:

SPATA48

Ensembl Gene ID:

ENSAPLG00000021349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044102

85355093 - 85381433

26341