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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85364710_85365692_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85364710 - 85365692
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TGTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTCTTTTAACA
Flanking Amino Acid:
SFTSPQKPVCFVSRSSRICH
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.6
0.69
0.9
76.9
36
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
72.8
0.71
1.1
77.15
33.2

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341