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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85365735_85366275_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85365735 - 85366275
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTATCCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATGACTTTGATT
Flanking Amino Acid:
SSRICHIPLYTGCVGAVNFE
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
67.8
0.4
1
63
37.4
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
63
0.49
1.3
73.43
37.9

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341