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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85366384_85378152_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
85366384 - 85378152
Intron Length:
11769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGCTCTTTAACT
Flanking Amino Acid:
TSKPRYTSTAHTPNIPGYTG
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
69
36.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
60.7
0.36
2.2
75.3
34.1
Minor BPS
81.9
1.08
1.1
88.47
36.7

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341