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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85378261_85381173_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85378261 - 85381173
Intron Length:
2913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTAACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTTTTTGTAACT
Flanking Amino Acid:
TSPSIIAQMHGYIAKHGSSS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.7
44.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73.8
0.54
0.9
67.5
38.1
Minor 5ss
37.5
-1.4
3.1
42.2
44.7
Minor BPS
62.1
0.46
2
82.56
39.6

Associated Gene:

Gene:
SPATA48
Ensembl Gene ID:
ENSAPLG00000021349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044102
85355093 - 85381433
26341