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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85408175_85447591_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85408175 - 85447591
Intron Length:
39417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTAACT
Flanking Amino Acid:
FSQGLVLSCPDNLRKMETDE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.6
0.71
0.7
79.6
25.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
76.1
0.9
1.6
93.33
34.8

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036199
85407607 - 85503799
96193
ENSAPLT00000023762
85407607 - 85499249
91643
ENSAPLT00000017254
85407607 - 85503799
96193