Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85434895_85447591_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

85434895 - 85447591

Intron Length:

12697

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTTGCATTAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.8

31.3

Major BPS

0.62

1.4

85.7

34.9

Major PPT

81.6

0.71

0.7

79.6

25.7

Minor 5ss

35.5

-1.6

2.9

44.3

43.6

Minor BPS

76.1

0.9

1.6

93.33

34.8

Associated Gene:

Gene:

IKZF1

Ensembl Gene ID:

ENSAPLG00000003006

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018393

85434735 - 85503799

69065