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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85447646_85455141_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85447646 - 85455141
Intron Length:
7496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTTCTTCACT
Flanking Amino Acid:
DEAQDMSQVSGKESPPISDV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.6
0.46
0.9
64
36.9
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
66.2
0.59
1.8
79.89
42.3

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023762
85407607 - 85499249
91643
ENSAPLT00000022704
85435437 - 85503799
68363
ENSAPLT00000018393
85434735 - 85503799
69065
ENSAPLT00000044736
85434735 - 85499249
64515
ENSAPLT00000017254
85407607 - 85503799
96193
ENSAPLT00000036199
85407607 - 85503799
96193