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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85447646_85484834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85447646 - 85484834
Intron Length:
37189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TGTAACAAAACT
Flanking Amino Acid:
DEAQDMSQVSAGNIKIETQS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
47.2
-0.1
2.1
71.99
44

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003076
85447592 - 85503799
56208