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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85455262_85484834_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85455262 - 85484834
Intron Length:
29573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TGTAACAAAACT
Flanking Amino Acid:
QQSAKNERVLAGNIKIETQS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
39.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
36.9
-1.5
3
39.1
46.1
Minor BPS
47.2
-0.1
2.1
71.99
44

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022704
85435437 - 85503799
68363
ENSAPLT00000018393
85434735 - 85503799
69065
ENSAPLT00000017254
85407607 - 85503799
96193
ENSAPLT00000036199
85407607 - 85503799
96193