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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85491537_85493477_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85491537 - 85493477
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAATTAATT
Flanking Amino Acid:
ALTGHLRTHSVGKPHKCGYC
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88.3
0.86
0.7
81.5
36
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
63.2
0.49
1.8
84.17
35.9

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018393
85434735 - 85503799
69065
ENSAPLT00000044736
85434735 - 85499249
64515
ENSAPLT00000017254
85407607 - 85503799
96193
ENSAPLT00000036199
85407607 - 85503799
96193
ENSAPLT00000003076
85447592 - 85503799
56208
ENSAPLT00000023762
85407607 - 85499249
91643
ENSAPLT00000022704
85435437 - 85503799
68363