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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85498713_85503092_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85498713 - 85503092
Intron Length:
4380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TAACTCCTGACT
Flanking Amino Acid:
RKSSMPQKFVGEKCLSDLPY
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
79.9
0.67
0.8
74.7
28.8
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
53.1
0.18
1.7
71.11
39.2

Associated Gene:

Gene:
IKZF1
Ensembl Gene ID:
ENSAPLG00000003006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018393
85434735 - 85503799
69065
ENSAPLT00000017254
85407607 - 85503799
96193
ENSAPLT00000003076
85447592 - 85503799
56208
ENSAPLT00000022704
85435437 - 85503799
68363