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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85526932_85532507_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85526932 - 85532507
Intron Length:
5576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
CATTTTGTACCA
Flanking Amino Acid:
MAKQLWGGVSAMEAPTHS
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
73.3
0.52
1
69.2
46.1
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
45.7
-0.3
2.2
58.95
41.6

Associated Gene:

Gene:
FIGNL1
Ensembl Gene ID:
ENSAPLG00000011450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011914
85524857 - 85542572
17716