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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85532751_85536881_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85532751 - 85536881
Intron Length:
4131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATGATGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TATCCATTGAAT
Flanking Amino Acid:
VLGLVCFRLKGSNELNKALL
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
68.4
0.41
1.1
63.3
46.5
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
56.8
0.3
1.8
76.64
39

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017891
85532535 - 85579430
46896
ENSAPLT00000003348
85532535 - 85579430
46896
ENSAPLT00000029683
85532535 - 85579430
46896
Gene:
FIGNL1
Ensembl Gene ID:
ENSAPLG00000011450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011914
85524857 - 85542572
17716