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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85536984_85542473_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85536984 - 85542473
Intron Length:
5490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACGG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
VTGLQEHIRKHVRLSHQFEH
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
57.3
47.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
36.9
-1.5
3.1
48.4
47.1
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003348
85532535 - 85579430
46896
ENSAPLT00000029683
85532535 - 85579430
46896
ENSAPLT00000017891
85532535 - 85579430
46896
Gene:
FIGNL1
Ensembl Gene ID:
ENSAPLG00000011450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011914
85524857 - 85542572
17716