Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85547671_85552325_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85547671 - 85552325

Intron Length:

4655

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

LLVNFDCSAMWVKKRSDLIG

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.1

0.99

0.8

92.6

23.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

84.9

0.79

0.8

80.6

30.4

Minor 5ss

41.8

-0.9

2.9

57.3

41.2

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

DDC

Ensembl Gene ID:

ENSAPLG00000003245

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029683

85532535 - 85579430

46896

ENSAPLT00000017891

85532535 - 85579430

46896

ENSAPLT00000003348

85532535 - 85579430

46896