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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85552394_85554273_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85552394 - 85554273
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
EFRHLLNGVEFADSFNFNPH
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
0.8
77.6
35.3
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029683
85532535 - 85579430
46896
ENSAPLT00000017891
85532535 - 85579430
46896
ENSAPLT00000003348
85532535 - 85579430
46896