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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85554369_85556452_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85554369 - 85556452
Intron Length:
2084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTGTTTAATT
Flanking Amino Acid:
FDRLLELGPICNKENIWMHI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
62.1
0.46
1.8
75.88
41.7

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029683
85532535 - 85579430
46896
ENSAPLT00000017891
85532535 - 85579430
46896
ENSAPLT00000003348
85532535 - 85579430
46896