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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85556520_85567967_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85556520 - 85567967
Intron Length:
11448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
GRLVAYASDQFCATLGTTPC
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80.3
0.68
0.9
73.8
36.9
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029683
85532535 - 85579430
46896