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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85568103_85573172_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85568103 - 85573172
Intron Length:
5070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCCTTCAACT
Flanking Amino Acid:
KDGQGGGVIQGSASEATLIS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.2
0.57
0.9
68.7
36.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
73.7
0.82
1.5
89.98
33.7

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003348
85532535 - 85579430
46896
ENSAPLT00000029683
85532535 - 85579430
46896
ENSAPLT00000017891
85532535 - 85579430
46896