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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85573293_85579229_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85573293 - 85579229
Intron Length:
5937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTCTGTATTT
Flanking Amino Acid:
KDIEKIIMPGAASPACTELE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77
0.61
1
71.6
38.1
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
50.5
0.1
2.2
76.04
41.4

Associated Gene:

Gene:
DDC
Ensembl Gene ID:
ENSAPLG00000003245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017891
85532535 - 85579430
46896