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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85610287_85611051_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85610287 - 85611051
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTAACTTGAAAA
Flanking Amino Acid:
QKIKHFQILPCEDDGQIFFS
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
77.3
36.8
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
49.7
-0
1.6
59.31
40

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037907
85608666 - 85694050
85385
ENSAPLT00000023835
85608666 - 85716492
107827
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121