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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85611146_85613760_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85611146 - 85613760
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTGTACTTAAAA
Flanking Amino Acid:
RIIKQQGLVDGLFLLRDSQS
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.8
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.1
0.61
0.8
70
36.5
Minor 5ss
39.8
-1.1
3.2
51.2
45.5
Minor BPS
63.4
0.42
1.6
70.87
40.6

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037907
85608666 - 85694050
85385
ENSAPLT00000023835
85608666 - 85716492
107827
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121