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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85613849_85614846_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85613849 - 85614846
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTCACCT
Flanking Amino Acid:
SPLHPSTLSTVIHRTQHWFH
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.7
0.76
0.8
75
35
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
48.7
-0
1.8
66.64
44.9

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121
ENSAPLT00000037907
85608666 - 85694050
85385
ENSAPLT00000023835
85608666 - 85716492
107827